Genome Information Upgrading Program

FY2007-FY2020

Project Period Organism, etc Focus Implementing Organization (Researcher) Details
FY2020 Rice Genome Sequencing of Oryza species II National Institute of Genetics (Yutaka Sato)
Mice Long-read sequencing of disease model mouse strains established in Japan RIKEN BioResource Research Center (Toyoyuki Takada)
Morning glory Collecting and providing information on genetic variations of 100 Japanese morning glory lines National Institute for Basic Biology (Atsushi Hoshino)
FY2019 Rice Genome Sequencing of Oryza species National Institute of Genetics (Yutaka Sato) Go to the details
(in Japanese)
Wheat Genome Sequencing of parental accessions of the NAM population of East Asian wheat Kyoto University (Shuhei Nasuda) Go to the details
(in Japanese)
FY2018 X. tropicalis Generation of the genome polymorphism data of Xenopus tropicalis inbred strains Hiroshima University (Hajime Ogino) Go to the details
(in Japanese)
Zebrafish Genetic analysis of zebrafish transgenic and inbred lines National Institute of Genetics (Koichi Kawakami) Go to the details
(in Japanese)
Chrysanthemum Whole genome sequencing of the model strain for the genus Chrysanthemum using long read sequencing technology Hiroshima University (Makoto Kusaba) Go to the details
(in Japanese)
Drosophila Sequencing genome-editing strains of Drosophila National Institute of Genetics (Kuniaki Saito) Go to the details
(in Japanese)
Silkworms Genome re-sequencing of large body-sized strains of the silkworms suitable for pharmacological, physiological and pathological studies The University of Tokyo (Toru Shimada) Go to the details
(in Japanese)
FY2017 Mice Genome resequencing of Japanese fancy mouse-derived JF1/Ms strain National Institute of Genetics (Toyoyuki Takada) Go to the details
(in Japanese)
Wheat Garnering fundamental information on wheat genomic diversity through de novo sequencing of the standard Japanese wheat cultivar Norin 61 Kyoto University (Shuhei Nasuda) Go to the details
(in Japanese)
FY2016 Silkworms Genome Re-sequencing of Diverse Strains of Bombyx mori and B. mandarina (2) The University of Tokyo (Toru Shimada) Go to the details
Rats Whole genome resequencing of the representative rat strains and development of a SNP typing kit Kyushu University (Mikita Suyama) Go to the details
Mice Genome resequencing of Japanese wild mouse-derived MSM/Ms strain National Institute of Genetics (Toyoyuki Takada) Go to the details
Algae Genome sequencing project of heterocystous cyanobacteria in the NIES collection Toyohashi University of Technology (Yuu Hirose) Go to the details
FY2015 Silkworms Genome Re-sequencing of Diverse Strains of Bombyx mori and B. mandarina The University of Tokyo (Toru Shimada) Go to the details
Drosophila Genome sequencing of diverse Drosophila species (II) National Institute of Genetics (Shu Kondo) Go to the details
Mice Sequence and structure determination and open to public of reference mouse genome based on long one-molecule sequencing RIKEN BioResource Center (Yoichi Gondo) Go to the details
Lotus Generation of high quality genome sequence of Gifu accession of Lotus japonicus to accelerate NBRP resource application Tohoku University (Shusei Sato) Go to the details
Pathogenic microorganisms Maintenance of whole genome sequences on related species of Aspergillus fumigatus Chiba University (Takashi Yaguchi) Go to the details
Rats Targeted genome resequencing of 20 strains of the rats Kyushu University (Mikita Suyama) Go to the details
FY2014 Rice Generation of genome sequence diversity information for wild relatives of rice National Institute of Genetics (Nori Kurata) Go to the details
General Microbes Genome sequencing of eukaryotic microorganisms of NBRP general microbes RIKEN BioResource Center (Moriya Ohkuma) Go to the details
Lotus Resequencing of the NBRP collected resources intended to upgrade the genome information of Lotus japonicus Tohoku University (Shusei Sato) Go to the details
Drosophila Genome sequencing of diverse Drosophila species National Institute of Genetics (Shu Kondo) Go to the details
FY2012 General microbes Genome sequencing of microbial strains for environmental and health science RIKEN BioResource Center (Moriya Ohkuma) Go to the details
Pathogenic microorganisms Genome Sequencing of Opportunistic Pathogens Gifu University (Takayuki Ezaki) Go to the details
FY2011 Rats Whole genome sequencing of F344 rat Kyoto University (Tadao Serikawa) Whole Genome Sequencing of F344/Stm
C. intestinalis / O. japonicus Genome sequencing of the Ciona intestinalis inbred line Shimoda Marine Research Center, University of Tsukuba (Kazuo Inaba) KH inbred line 3A
KH inbred line 4B
FY2010 Mice Completion of BAC end sequencing of the mouse C57BL/6N substrain RIKEN BioResource Center (Atsushi Yoshiki) RIKEN BRC DNA
Mouse BAC browser
DDBJ(GA000001 – GA131507)
NBDC
Tomato Sequence analysis of Micro-Tom sequencing Gene Research Center, University of Tsukuba (Koh Aoki) DDBJ(DRA000311)
Japanese macaques Genome sequence of Japanese macaques National Institute for Physiological Sciences (Tadashi Isa) Japanese Monkey Genome Server
DRA000589 (DRP000620)
DRA000626 (DRP000657)
Medaka Micro-Tom BAC end sequencing National Institute for Basic Biology (Kiyoshi Naruse) medaka SNP(Beta)
FY2009 Mice BAC end sequencing of the mouse C57BL/6N substrain RIKEN BioResource Center (Atsushi Yoshiki) RIKEN BRC DNA
Mouse BAC browser
DDBJ(DH839446-DH96157)
NBDC
Medaka Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse) NBRP Medaka
NBDC
Wheat Full-length cDNA resources of common wheat Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara) KOMUGI
Tomato Micro-Tom BAC end sequencing Gene Research Center, University of Tsukuba (Erika Asamizu) Kazusa
DDBJ (FT227487-FT321168)
NBDC
FY2008 Medaka Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse) NBRP Medaka
Rats Rat LE/Stm BAC end sequencing Kyoto University (Tadao Serikawa) RIKEN BRC DNA
Rat Bac End DB
Tomato Enhancing tomato resources by sequencing Micro-Tom full-length cDNA Kazusa DNA Research Institute (Koh Aoki) KaFTom
FY2007 Medaka Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse) NBRP Medaka
Drosophila Genome and property information for the quality control of Drosophila strains National Institute of Genetics (Ryu Ueda) DGRC (Japan Drosophila Resources)
Arabidopsis Sequence analysis of full-length cDNAs of Thellungiella halophila as new Arabidopsis resources RIKEN BioResource Center (Masatomo Kobayashi) RIKEN BRC DNA
Wheat Full-length cDNA resources of bread wheat Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara) KOMUGI
Project Period Organism, etc Focus Implementing Organization (Researcher) Details

FY2002–2006

Project Period Organism, etc Method・Content Amount Imprementing Organization Public Site Distribution site
FY2006 Mice MSM-WGS ca.1300000 reads RIKEN NIG Mouse Genome Database
Mice MSM-WGS ca.1300000 reads NIG NIG Mouse Genome Database
Mice cDNA library, 4 strains, end sequencing ca.80000 clones NIG NBRP
NBRP Blast
mouse BLAST
Rats F344/Stm-BAC ends ca.240000 clones RIKEN Rat Bac End DB
DDBJ (DH508174-839445)
RIKEN BRC DNA
silkworm EST ends ca.65000 clones NIG SilkBase
silkworm sRNA ca.20000 clones NIG DDBJ(AB386191-AB424683)
Arabidopsis/Cultured plant cells, genes full length cDNA 1678 clones RIKEN RIKEN BRC DNA (Plant) RIKEN BRC DNA (Plant)
Glycine max full length cDNA 2000 clones RIKEN
S. pombe genomic DNA NIG Yeast Yeast
FY2005 Mice MSM-WGS ca.1030000 reads RIKEN NIG Mouse Genome Database
Mice MSM-WGS ca.1100000 reads NIG NIG Mouse Genome Database
Rats BAC libraries 2 libraries RIKEN
Drosophila EST libraries 5 libraries NIG
Drosophila EST ends ca.100000 clones NIG DGRC
Glycine max full length cDNA 2000 clones RIKEN
S. pombe full length cDNA end sequences ca.50000 clones NIG Yeast Yeast
FY2003 Xenopus EST ends ca.60000 clones NIG NBRP Xenopus Genome RIKEN BRC DNA
XDB
Drosophila BAC ends ca.45000 clones RIKEN DGRC (AG909574-AG981700)
Japanese macaques BAC ends ca.80000 clones RIKEN Japanese macaque BAC browser
DDBJ (AG613379-AG780537)
RIKEN BRC DNA
Wheat EST ends ca.40000 clones NIG KOMUGI KOMUGI
Wheat full length cDNA ca.4000 clones RIKEN
Wheat BAC 15 clones RIKEN KOMUGI
Barley EST ends ca.40000 clones NIG BARLEY DB
Barley cDNA ca.5000 clones NIG BARLEY DB
Arabidopsis/Cultured plant cells, genes full length cDNA ca.6000 clones NIG RIKEN BRC DNA (Plant) RIKEN BRC DNA (Plant)
FY2002 Mice MSM-BAC ends ca.200000 clones RIKEN NIG Mouse Genome Database RIKEN BRC DNA
Medaka WGS ca.500000 reads RIKEN NBRP Medaka Genome
Medaka WGS ca.500000 reads NIG NBRP Medaka Genome
Xenopus EST ends ca.160000 clones NIG NBRP Xenopus Genome RIKEN BRC DNA
XDB
Drosophila BAC libraries 5 libraries RIKEN
Japanese macaques BAC libraries 1 library RIKEN
Human BAC 53 RIKEN RIKEN BRC DNA
Wheat EST ends ca.100000 clones NIG KOMUGI KOMUGI
Arabidopsis/Cultured plant cells, genes full length cDNA ca.2400 clones NIG RIKEN BRC DNA (Plant) RIKEN BRC DNA (Plant)
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