Genome Information Upgrading Program
FY2007-FY2020
| Project Period | Organism, etc | Focus | Implementing Organization (Researcher) | Details |
|---|---|---|---|---|
| FY2020 | Rice | Genome Sequencing of Oryza species II | National Institute of Genetics (Yutaka Sato) | Go to the details (in Japanese) |
| Mice | Long-read sequencing of disease model mouse strains established in Japan | RIKEN BioResource Research Center (Toyoyuki Takada) | Go to the details (in Japanese) |
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| Morning glory | Collecting and providing information on genetic variations of 100 Japanese morning glory lines | National Institute for Basic Biology (Atsushi Hoshino) | Go to the details (in Japanese) |
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| FY2019 | Rice | Genome Sequencing of Oryza species | National Institute of Genetics (Yutaka Sato) | Go to the details (in Japanese) |
| Wheat | Genome Sequencing of parental accessions of the NAM population of East Asian wheat | Kyoto University (Shuhei Nasuda) | Go to the details (in Japanese) |
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| FY2018 | X. tropicalis | Generation of the genome polymorphism data of Xenopus tropicalis inbred strains | Hiroshima University (Hajime Ogino) | Go to the details (in Japanese) |
| Zebrafish | Genetic analysis of zebrafish transgenic and inbred lines | National Institute of Genetics (Koichi Kawakami) | Go to the details (in Japanese) |
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| Chrysanthemum | Whole genome sequencing of the model strain for the genus Chrysanthemum using long read sequencing technology | Hiroshima University (Makoto Kusaba) | Go to the details (in Japanese) |
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| Drosophila | Sequencing genome-editing strains of Drosophila | National Institute of Genetics (Kuniaki Saito) | Go to the details (in Japanese) |
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| Silkworms | Genome re-sequencing of large body-sized strains of the silkworms suitable for pharmacological, physiological and pathological studies | The University of Tokyo (Toru Shimada) | Go to the details (in Japanese) |
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| FY2017 | Mice | Genome resequencing of Japanese fancy mouse-derived JF1/Ms strain | National Institute of Genetics (Toyoyuki Takada) | Go to the details (in Japanese) |
| Wheat | Garnering fundamental information on wheat genomic diversity through de novo sequencing of the standard Japanese wheat cultivar Norin 61 | Kyoto University (Shuhei Nasuda) | Go to the details (in Japanese) |
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| FY2016 | Silkworms | Genome Re-sequencing of Diverse Strains of Bombyx mori and B. mandarina (2) | The University of Tokyo (Toru Shimada) | Go to the details |
| Rats | Whole genome resequencing of the representative rat strains and development of a SNP typing kit | Kyushu University (Mikita Suyama) | Go to the details | |
| Mice | Genome resequencing of Japanese wild mouse-derived MSM/Ms strain | National Institute of Genetics (Toyoyuki Takada) | Go to the details | |
| Algae | Genome sequencing project of heterocystous cyanobacteria in the NIES collection | Toyohashi University of Technology (Yuu Hirose) | Go to the details | |
| FY2015 | Silkworms | Genome Re-sequencing of Diverse Strains of Bombyx mori and B. mandarina | The University of Tokyo (Toru Shimada) | Go to the details |
| Drosophila | Genome sequencing of diverse Drosophila species (II) | National Institute of Genetics (Shu Kondo) | Go to the details | |
| Mice | Sequence and structure determination and open to public of reference mouse genome based on long one-molecule sequencing | RIKEN BioResource Center (Yoichi Gondo) | Go to the details | |
| Lotus | Generation of high quality genome sequence of Gifu accession of Lotus japonicus to accelerate NBRP resource application | Tohoku University (Shusei Sato) | Go to the details | |
| Pathogenic microorganisms | Maintenance of whole genome sequences on related species of Aspergillus fumigatus | Chiba University (Takashi Yaguchi) | Go to the details | |
| Rats | Targeted genome resequencing of 20 strains of the rats | Kyushu University (Mikita Suyama) | Go to the details | |
| FY2014 | Rice | Generation of genome sequence diversity information for wild relatives of rice | National Institute of Genetics (Nori Kurata) | Go to the details |
| General Microbes | Genome sequencing of eukaryotic microorganisms of NBRP general microbes | RIKEN BioResource Center (Moriya Ohkuma) | Go to the details | |
| Lotus | Resequencing of the NBRP collected resources intended to upgrade the genome information of Lotus japonicus | Tohoku University (Shusei Sato) | Go to the details | |
| Drosophila | Genome sequencing of diverse Drosophila species | National Institute of Genetics (Shu Kondo) | Go to the details | |
| FY2012 | General microbes | Genome sequencing of microbial strains for environmental and health science | RIKEN BioResource Center (Moriya Ohkuma) | Go to the details |
| Pathogenic microorganisms | Genome Sequencing of Opportunistic Pathogens | Gifu University (Takayuki Ezaki) | Go to the details | |
| FY2011 | Rats | Whole genome sequencing of F344 rat | Kyoto University (Tadao Serikawa) | Whole Genome Sequencing of F344/Stm |
| C. intestinalis / O. japonicus | Genome sequencing of the Ciona intestinalis inbred line | Shimoda Marine Research Center, University of Tsukuba (Kazuo Inaba) | KH inbred line 3A KH inbred line 4B |
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| FY2010 | Mice | Completion of BAC end sequencing of the mouse C57BL/6N substrain | RIKEN BioResource Center (Atsushi Yoshiki) | RIKEN BRC DNA Mouse BAC browser DDBJ（GA000001 – GA131507） NBDC |
| Tomato | Sequence analysis of Micro-Tom sequencing | Gene Research Center, University of Tsukuba (Koh Aoki) | DDBJ（DRA000311） | |
| Japanese macaques | Genome sequence of Japanese macaques | National Institute for Physiological Sciences (Tadashi Isa) | Japanese Monkey Genome Server DRA000589 (DRP000620) DRA000626 (DRP000657) |
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| Medaka | Micro-Tom BAC end sequencing | National Institute for Basic Biology (Kiyoshi Naruse) | medaka SNP（Beta) | |
| FY2009 | Mice | BAC end sequencing of the mouse C57BL/6N substrain | RIKEN BioResource Center (Atsushi Yoshiki) | RIKEN BRC DNA Mouse BAC browser DDBJ（DH839446-DH96157） NBDC |
| Medaka | Full-length cDNA resources of Medaka fish | National Institute for Basic Biology (Kiyoshi Naruse) | NBRP Medaka NBDC |
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| Wheat | Full-length cDNA resources of common wheat | Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara) | KOMUGI | |
| Tomato | Micro-Tom BAC end sequencing | Gene Research Center, University of Tsukuba (Erika Asamizu) | Kazusa DDBJ (FT227487-FT321168) NBDC |
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| FY2008 | Medaka | Full-length cDNA resources of Medaka fish | National Institute for Basic Biology (Kiyoshi Naruse) | NBRP Medaka |
| Rats | Rat LE/Stm BAC end sequencing | Kyoto University (Tadao Serikawa) | RIKEN BRC DNA Rat Bac End DB |
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| Tomato | Enhancing tomato resources by sequencing Micro-Tom full-length cDNA | Kazusa DNA Research Institute (Koh Aoki) | KaFTom | |
| FY2007 | Medaka | Full-length cDNA resources of Medaka fish | National Institute for Basic Biology (Kiyoshi Naruse) | NBRP Medaka |
| Drosophila | Genome and property information for the quality control of Drosophila strains | National Institute of Genetics (Ryu Ueda) | DGRC (Japan Drosophila Resources) | |
| Arabidopsis | Sequence analysis of full-length cDNAs of Thellungiella halophila as new Arabidopsis resources | RIKEN BioResource Center (Masatomo Kobayashi) | RIKEN BRC DNA | |
| Wheat | Full-length cDNA resources of bread wheat | Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara) | KOMUGI | |
| Project Period | Organism, etc | Focus | Implementing Organization (Researcher) | Details |
FY2002–2006
| Project Period | Organism, etc | Method・Content | Amount | Imprementing Organization | Public Site | Distribution site |
|---|---|---|---|---|---|---|
| FY2006 | Mice | MSM-WGS | ca.1300000 reads | RIKEN | NIG Mouse Genome Database | – |
| Mice | MSM-WGS | ca.1300000 reads | NIG | NIG Mouse Genome Database | – | |
| Mice | cDNA library, 4 strains, end sequencing | ca.80000 clones | NIG | NBRP NBRP Blast mouse BLAST |
– | |
| Rats | F344/Stm-BAC ends | ca.240000 clones | RIKEN | Rat Bac End DB DDBJ (DH508174-839445) |
RIKEN BRC DNA | |
| silkworm | EST ends | ca.65000 clones | NIG | SilkBase | – | |
| silkworm | sRNA | ca.20000 clones | NIG | DDBJ(AB386191-AB424683) | – | |
| Arabidopsis/Cultured plant cells, genes | full length cDNA | 1678 clones | RIKEN | RIKEN BRC DNA (Plant) | RIKEN BRC DNA (Plant) | |
| Glycine max | full length cDNA | 2000 clones | RIKEN | – | – | |
| S. pombe | genomic DNA | – | NIG | Yeast | Yeast | |
| FY2005 | Mice | MSM-WGS | ca.1030000 reads | RIKEN | NIG Mouse Genome Database | – |
| Mice | MSM-WGS | ca.1100000 reads | NIG | NIG Mouse Genome Database | – | |
| Rats | BAC libraries | 2 libraries | RIKEN | – | – | |
| Drosophila | EST libraries | 5 libraries | NIG | – | – | |
| Drosophila | EST ends | ca.100000 clones | NIG | DGRC | – | |
| Glycine max | full length cDNA | 2000 clones | RIKEN | – | – | |
| S. pombe | full length cDNA end sequences | ca.50000 clones | NIG | Yeast | Yeast | |
| FY2003 | Xenopus | EST ends | ca.60000 clones | NIG | NBRP Xenopus Genome | RIKEN BRC DNA XDB |
| Drosophila | BAC ends | ca.45000 clones | RIKEN | DGRC (AG909574-AG981700) | – | |
| Japanese macaques | BAC ends | ca.80000 clones | RIKEN | Japanese macaque BAC browser DDBJ (AG613379-AG780537) |
RIKEN BRC DNA | |
| Wheat | EST ends | ca.40000 clones | NIG | KOMUGI | KOMUGI | |
| Wheat | full length cDNA | ca.4000 clones | RIKEN | – | – | |
| Wheat | BAC | 15 clones | RIKEN | KOMUGI | – | |
| Barley | EST ends | ca.40000 clones | NIG | BARLEY DB | – | |
| Barley | cDNA | ca.5000 clones | NIG | BARLEY DB | – | |
| Arabidopsis/Cultured plant cells, genes | full length cDNA | ca.6000 clones | NIG | RIKEN BRC DNA (Plant) | RIKEN BRC DNA (Plant) | |
| FY2002 | Mice | MSM-BAC ends | ca.200000 clones | RIKEN | NIG Mouse Genome Database | RIKEN BRC DNA |
| Medaka | WGS | ca.500000 reads | RIKEN | NBRP Medaka Genome | – | |
| Medaka | WGS | ca.500000 reads | NIG | NBRP Medaka Genome | – | |
| Xenopus | EST ends | ca.160000 clones | NIG | NBRP Xenopus Genome | RIKEN BRC DNA XDB |
|
| Drosophila | BAC libraries | 5 libraries | RIKEN | – | – | |
| Japanese macaques | BAC libraries | 1 library | RIKEN | – | – | |
| Human | BAC | 53 | RIKEN | – | RIKEN BRC DNA | |
| Wheat | EST ends | ca.100000 clones | NIG | KOMUGI | KOMUGI | |
| Arabidopsis/Cultured plant cells, genes | full length cDNA | ca.2400 clones | NIG | RIKEN BRC DNA (Plant) | RIKEN BRC DNA (Plant) |